Tag Archives: pgfplots

Discontinuous x axis with pgfplots

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Having a discontinuous y axis is common and Stackoverflow has a few solutions for that. I wanted an x axis with a gap (values 0-10 plus value 20). So this is what I did.

I create an axis from 0 to 12 and give 12 the label “20”. I add an extra tick on the x-axis at about halfway between 10 and “12”, where I want the gap and make it thick and white – basically I want a break in the axis. Then over that break I draw the “label” of this tick, which is two vertical lines at an angle, symbolizing the discontinuity. The relevant part of the style:

xmin=0,
xmax=12.5, 
xticklabels={0, 2, 4, 6, 8, 10, 20},
extra x ticks={11.1},
extra x tick style={grid=none, tick style={white, very thick}, tick label style={xshift=0cm,yshift=.50cm, rotate=-20}},
extra x tick label={\color{black}{/\!\!/}},

And then I add the data with x-values 20 at x-coordinate “12”:

\addplot coordinates {
(0, 43.3) (1, 43.2) (2, 43.3) (3, 42.9) (4, 42.1) (5, 41.4) 
(6, 41.2) (7, 41.7) (8, 41.7) (9, 42.1) (10, 42.1) }; 
\pgfplotsset{cycle list shift=-1}
\addplot coordinates { (12, 43.8) };
\draw[dotted] (axis cs:10, 42.1) -- (axis cs:12, 43.8);

Adding the last point separately from the rest of the data serves the purpose that I can draw the dotted line by hand. cycle list shift=-1 causes the new “plot” to have the same style as the previous. There might be a way of doing this, but this works.

Hat tip: Stackoverflow, but I currently cannot find the question(s) and answer(s) that helped me solve this. Still, thank you, anonymous people.

Marking significance in a bar plot

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And still on the topic of LaTeX presentations, this time trying to plot a symbol over a bar to indicate significance.

This is how it works:

\node[xshift=\pgfkeysvalueof{/pgf/bar shift},anchor=south] at (axis cs:Xcoord1,0.47) {$\bullet$};

You need to put this code directly after the point where the data series has been plotted. Example:

\begin{tikzpicture}
\begin{axis}[xtick=data,axis x line*=bottom,axis y line=left,symbolic x coords={Xcoord1, Xcoord2}]

\addplot [ybar,seagreen] coordinates {(Xcoord1, -0.027) (Xcoord2, 0.436)}; 
\node[xshift=\pgfkeysvalueof{/pgf/bar shift},anchor=south] at (axis cs:Xcoord2,0.47) {$\bullet$}; 
\addlegendentry{System 1}

\addplot+ [ybar,blue] coordinates  {(Xcoord1, 0.331) (Xcoord2, 0.095)}; 
\node[xshift=\pgfkeysvalueof{/pgf/bar shift},anchor=south] at (axis cs:Xcoord1,0.36) {$\bullet$};
\addlegendentry{System 2}

\addplot+ [ybar,orange] coordinates {(Xcoord1, 0.222) (Xcoord2, 0.441)}; 
\node[xshift=\pgfkeysvalueof{/pgf/bar shift},anchor=south] at (axis cs:Xcoord1,0.25) {$\bullet$};
\node[xshift=\pgfkeysvalueof{/pgf/bar shift},anchor=south] at (axis cs:Xcoord2,0.47) {$\bullet$};
\addlegendentry{System 3}
\end{axis}
\end{tikzpicture}

Overlays for bar charts (take 2)

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A while back I posted about using overlays for bar charts to show one value at a time. For my latest presentation I had a similar but slightly different wish: show all values for one system at a time, one system after the other.

Easily done, I just adapt the code from my previous post to show all values at the same time:

\newcommand{\addplotoverlay}[3][]{
\alt<#3->{
\addplot+ [ybar,#1] coordinates {#2}; 
}{
\addplot+ [ybar,#1] coordinates {(Xcoord1,0)}; % + don't show zero values in plot
}
}

This is specific to my plot, Xcoord1 is one of my symbolic x-coordinates in the plot. Other than that, the code is completely independent from the used coordinates and the number of them, which makes it more flexible than my old stuff.

Usage (this will let seagreen bars at the given coordinates appear on slide 2):

\addplotoverlayrank[seagreen]{(Xcoord1, 0.331) (Xcoord2, 0.095)}{2}

Skip a style for a bar in a bar plot

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Let’s say you add five data series to a bar plot and they would get the colors blue – red – brown – gray – purple. Now suppose you have another plot with only four data series, but you would like them to have the colors blue – red – gray – purple, because they are similar to the series 1, 2, 4 and 5 in the first plot. You also don’t want to change the order. What can you do?

The style (colors, markers, etc) for a dataseries are determined by the cycle list in pgfplots. This is a series of style definitions that are applied to your data series one after the other. You can of course define one cycle list for each of the plots and assign the colors the way you want:

\pgfplotscreateplotcyclelist{my five bars}{%
solid,fill,blue, \\%
solid,fill,red, \\%
solid,fill,brown, \\%
solid,fill,gray, \\%
solid,fill,purple, \\%
}
\pgfplotscreateplotcyclelist{my four bars}{%
solid,fill,blue, \\%
solid,fill,red, \\%
solid,fill,gray, \\%
solid,fill,purple, \\%
}

\begin{tikzpicture}
\begin{axis}[cycle list name=my five bars,...]
... add the five data series ...
\end{axis}
\end{tikzpicture}
\begin{tikzpicture}
\begin{axis}[cycle list name=my four bars,...]
... add the four data series ...
\end{axis}
\end{tikzpicture}

But you always need to remember to change both versions. Fortunately there is an easier way! You can shift the index of the cycle list:

\begin{axis}[cycle list name=my five bars,...]
... add first two data series ...
\pgfplotsset{cycle list shift=1} % Skips one style
... add the other two data series ...
\end{axis}
\end{tikzpicture}

Done!

Plot legend in figure caption

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If you have a plot and add names to the data series with \addlegendentry{}, a legend is added to the plot that specifies the names for the lines or bars. This is an example plot from my thesis:

\begin{figure}
\begin{tikzpicture}
\begin{axis}[myplot]
\addplot plot coordinates {(1, 0.17) (2, 0.13) (3, 0.09) (4, 0.06) (5, 0.01) (6, 0.01)};
\addlegendentry{System1} % for legend
\addplot plot coordinates {(1, 0.13) (2, 0.16) (3, 0.16) (4, 0.14) (5, 0.14) (6, 0.13)};
\addlegendentry{System2} % for legend
\end{axis}
\end{tikzpicture}
\caption{Results (Precision) at different $k$ for the two systems}
\end{figure}

You can influence the placement and appearance of the legend and it looks really professional. Most of the time that will be exactly what you want. But not always. I wanted the legend to be embedded in the text of the caption (long story why). And this is possible and even quite simple! You just need to define a label for the data series and when you refer to that label, a picture of the line and marker is drawn as the reference.

\begin{figure}
\begin{tikzpicture}
\begin{axis}[myplot]
\addplot plot coordinates {(1, 0.17) (2, 0.13) (3, 0.09) (4, 0.06) (5, 0.01) (6, 0.01)};
\label{tikz:System1}
%\addlegendentry{System1} % remove to get rid of legend
\addplot plot coordinates {(1, 0.13) (2, 0.16) (3, 0.16) (4, 0.14) (5, 0.14) (6, 0.13)};
\label{tikz:System2}
%\addlegendentry{System2}
\end{axis}
\end{tikzpicture}
\caption{Results (Precision) at different $k$ for the two systems \ref{tikz:System1} System 1 and \ref{tikz:System2} System 2}
\end{figure}

Pgfplots is cool!

Hat tip: Stackexchange (the question is about something else)

Overlays for bar charts

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Yesterday I posted about creating bar charts with TikZ and pgfplots.

Today I want to present a command to make the bars of one data series (i.e., one of my systems) appear one after the other on a beamer LaTeX slide.

This is the code to put into your preamble:

\newcounter{MyNextSlide}
\newcounter{MyNextNextSlide}
\newcommand{\addplotoverlay}[5][]{
\setcounter{MyNextSlide}{#5}
\stepcounter{MyNextSlide}
\setcounter{MyNextNextSlide}{\theMyNextSlide}
\stepcounter{MyNextNextSlide}
\alt<#5->{\only<#5->{\alt<\theMyNextSlide->{\alt<\theMyNextNextSlide->{
\addplot+ [ybar,#1] coordinates {#2 #3 #4}; 
}{
\addplot+ [ybar,#1] coordinates {#2 #3}; 
}}{
\addplot+ [ybar,#1] coordinates {#2}; 
}}}{
\addplot+ [ybar,#1] coordinates {(PI,0)}; % + don't show zero values in plot
}
}

Usage (‘first slide’ refers to the slide on which value 1 should first appear, it will stay and the slide afterwards will add value 2, the slide after that will add value 3): 

\addplotoverlay [color or other options] {value 1}{value 2}{value 3}{first slide}

This depends on there being three data points in a data series and I have hardcoded the x coordinate PI. You’ll probably need to adjust this before you are able to do something useful with this code.

Bar charts in LaTeX with TikZ

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I have four systems to compare (baseline, minimal, window, syntax) on three different tasks (let’s call them PI, AI and AC). I want a bar chart (similar to this example). We of course use TikZ and pgfplots and there is ybar to get a bar chart. The outer bars are cut off, so we need to add a little space on both sides with enlarge x limits. We can play around with the axes, the height and the width of the plot and the legend, but you can look at other examples for this, I’ll focus on two things here.

First, I would like to have the three tasks side by side with a nice name. In TikZ we can use symbolic x coordinates for this, we just give them some names and can then use them like any other x coordinate, e.g., to put a data point at (PI, 50). We can give the coordinates labels that are nicer to read with xticklabels. Usually there will be ‘ticks’ (i.e., markers on the x axis) somewhere randomly, to get only for each x-axis label/task, use xtick=data.

symbolic x coords={PI, AI, AC},
xticklabels={Pred. ident., Arg. ident., Arg. class.},
xtick=data,

Second, I would like to have the numbers above the bars with one decimal place. We can get the numbers with these two lines (the first one gives the numbers, as they are too big the second line adjusts the font size):

nodes near coords={\pgfmathprintnumber[fixed zerofill,fixed,precision=1]{\pgfplotspointmeta}}
every node near coord/.append style={font=\tiny}

To get rid of zeros, we can replace the second line with

every node near coord/.append style={
      check for zero/.code={
        \pgfmathfloatifflags{\pgfplotspointmeta}{0}{
           \pgfkeys{/tikz/coordinate}
        }{}
      }, 
      check for zero, font=\tiny},

So this is my final axis style:

\pgfplotsset{resultsplot/.style={
axis x line*=bottom, 
axis y line=left, 
ybar,
symbolic x coords={PI, AI, AC},
xticklabels={Pred. ident., Arg. ident., Arg. class.},
xtick=data,
enlarge x limits=0.2,
nodes near coords={\pgfmathprintnumber[fixed zerofill,fixed,precision=1]{\pgfplotspointmeta}},
every node near coord/.append style={
      check for zero/.code={
        \pgfmathfloatifflags{\pgfplotspointmeta}{0}{
           \pgfkeys{/tikz/coordinate}
        }{}
      }, check for zero, font=\tiny},
area legend,
legend style={at={(0.5,-0.12)},
anchor=north,legend columns=-1},
}
}

And now we can get the actual graph that uses this axis style. Each plot represents a different system (the numbers are F1 scores):

 
\begin{tikzpicture}
\begin{axis}[resultsplot]
\addplot+ [ybar,green] coordinates {(PI, 67.8) (AI, 30.6) (AC, 20.2)};
\addlegendentry{Baseline}
\addplot+ [ybar,blue] coordinates {(PI, 78.6) (AI, 21.2) (AC, 16.5)};
\addlegendentry{Minimal system}
\addplot+ [ybar,orange] coordinates {(PI, 80.0) (AI, 44.2) (AC, 36.6)};
\addlegendentry{Window}
\addplot+ [ybar,red] coordinates {(PI, 80.1) (AI, 54.2) (AC, 44.8)};
\addlegendentry{Syntax}
\end{axis}
\end{tikzpicture}

Have fun!